BulkTracker pkgsrc bulk build status

Branch
upstream-bulktest
Platform
Description: Test CHECK_WRKREF+=destdir.
Compiler
gcc
Timestamp
2024-02-09 16:46:00 +0000 UTC
User
MNX Cloud
Report URL
https://us-central.manta.mnx.io/pkgsrc/public/reports/upstream-bulktest/20240209.1646/meta/report.xz

biology/

Location Package Name Status Breaks
biology/minimap2 minimap2-2.24nb1 ok 0
biology/py-pydicom py311-pydicom-2.4.4 indirect-failed 0
biology/kallisto kallisto-0.50.1 indirect-failed 0
biology/bcftools bcftools-1.17nb1 indirect-failed 0
biology/gffread gffread-0.12.7 failed 3
biology/bioperl bioperl-1.7.7nb4 indirect-failed 0
biology/py-cutadapt py310-cutadapt-3.5 indirect-failed 0
biology/glimmer glimmer-2.13nb1 ok 0
biology/chemtool chemtool-1.6.14nb21 indirect-failed 0
biology/py-dna-features-viewer py39-dna-features-viewer-3.1.3 indirect-failed 0
biology/py-dnaio py311-dnaio-0.9.1 indirect-failed 0
biology/hmmer hmmer-3.0 ok 0
biology/py-multiqc py312-multiqc-1.14 indirect-failed 0
biology/stride stride-20030804 ok 0
biology/xylem xylem-1.8.7 ok 0
biology/vsearch vsearch-2.27.0 indirect-failed 0
biology/lucy lucy-1.20 ok 0
biology/genesplicer genesplicer-20030403 ok 0
biology/vcf-split vcf-split-0.1.5.10 failed 0
biology/bodr bodr-9nb20 indirect-failed 0
biology/mopac mopac-22.0.6nb1 indirect-failed 0
biology/py-cutadapt py39-cutadapt-3.5 indirect-failed 0
biology/py-pydicom py39-pydicom-2.4.4 indirect-failed 0
biology/py-macs2 py310-macs2-2.2.9.1 indirect-failed 0
biology/fastDNAml fastDNAml-1.2.2 ok 0
biology/nut nut-15.8 ok 0
biology/py-dnaio py38-dnaio-0.9.1 indirect-failed 0
biology/py-bcbio-gff py312-bcbio-gff-0.7.0 indirect-failed 0
biology/py-macs3 py311-macs3-3.0.0 indirect-failed 0
biology/ad2vcf ad2vcf-0.1.6 failed 0
biology/fasda fasda-0.1.5 failed 3
biology/py-biopython py310-biopython-1.81 indirect-failed 0
biology/py-multiqc py311-multiqc-1.14 indirect-failed 0
biology/bwa bwa-0.7.17nb7 indirect-failed 0
biology/hisat2 hisat2-2.2.1nb4 indirect-failed 0
biology/py-dna-features-viewer py312-dna-features-viewer-3.1.3 indirect-failed 0
biology/fastx-toolkit fastx-toolkit-0.0.14.6nb1 indirect-failed 0
biology/py-pydicom py312-pydicom-2.4.4 indirect-failed 0
biology/openbabel openbabel-3.1.1nb23 indirect-failed 0
biology/gromacs gromacs-4.5.5nb20 indirect-failed 0
biology/fluctuate fluctuate-1.4 ok 0
biology/trimmomatic Trimmomatic-0.38 ok 0
biology/biolibc biolibc-0.2.6 ok 0
biology/fastp fastp-0.22.0 ok 0
biology/py-dna-features-viewer py310-dna-features-viewer-3.1.3 indirect-failed 0
biology/sewer sewer-2.6nb2 ok 0
biology/racon racon-1.4.3 indirect-failed 0
biology/balance-tui balance-tui-0.1.2 indirect-failed 0
biology/p5-Bio-ASN1-EntrezGene p5-Bio-ASN1-EntrezGene-1.73nb3 ok 0
biology/primer3 primer3-2.3.6 ok 0
biology/py-cutadapt py38-cutadapt-3.5 indirect-failed 0
biology/chip-seq chip-seq-1.2 indirect-failed 0
biology/beagle beagle-5.2 indirect-failed 0
biology/igv igv-2.9.2 ok 0
biology/py-biopython py39-biopython-1.81 indirect-failed 0
biology/stacks stacks-2.60nb3 indirect-failed 0
biology/vcf2hap vcf2hap-0.1.6.7 failed 0
biology/py-bcbio-gff py39-bcbio-gff-0.7.0 indirect-failed 0
biology/cdhit cdhit-4.8.1nb1 ok 0
biology/fastq-trim fastq-trim-0.1.3 ok 0
biology/sra-tools sra-tools-3.0.6nb2 indirect-failed 0
biology/fastqc fastqc-0.11.9nb2 ok 0
biology/profit profit-2.2nb1 ok 0
biology/phylip phylip-3.69 indirect-failed 0
biology/microsynteny-tools microsynteny-tools-0.1.0.175 indirect-failed 0
biology/filter-fastq filter-fastq-0.0.0.20210527nb2 indirect-failed 0
biology/plinkseq plinkseq-0.08nb9 indirect-failed 0
biology/py-multiqc py310-multiqc-1.14 indirect-failed 0
biology/py-bcbio-gff py311-bcbio-gff-0.7.0 indirect-failed 0
biology/py-dnaio py312-dnaio-0.9.1 indirect-failed 0
biology/canu canu-2.2nb2 indirect-failed 0
biology/stringtie stringtie-2.1.1 ok 0
biology/rna-star rna-star-2.7.10b indirect-failed 0
biology/bowtie2 bowtie2-2.5.3 indirect-failed 0
biology/py-biopython py312-biopython-1.81 indirect-failed 0
biology/rasmol rasmol-2.7.3nb2 indirect-failed 0
biology/pdbalign pdbalign-20030812 ok 0
biology/py-pydicom py310-pydicom-2.4.4 indirect-failed 0
biology/py-macs2 py311-macs2-2.2.9.1 indirect-failed 0
biology/py-dnaio py310-dnaio-0.9.1 indirect-failed 0
biology/py-bcbio-gff py38-bcbio-gff-0.7.0 indirect-failed 0
biology/seqtk seqtk-1.4 ok 0
biology/maeparser maeparser-1.2.4nb7 indirect-failed 0
biology/xmakemol xmakemol-5.16h indirect-failed 0
biology/py-cutadapt py312-cutadapt-3.5 indirect-failed 0
biology/bedtools bedtools-2.31.1 indirect-failed 0
biology/clustalw clustalw-2.1 ok 0
biology/biolibc-tools biolibc-tools-0.1.4.13 ok 0
biology/libpll libpll-0.3.2nb1 prefailed 0
biology/azara azara-2.7nb10 indirect-failed 0
biology/py-multiqc py39-multiqc-1.14 indirect-failed 0
biology/mummer mummer-3.20nb10 ok 0
biology/miniasm miniasm-0.3 ok 0
biology/py-bcbio-gff py310-bcbio-gff-0.7.0 indirect-failed 0
biology/py-dnaio py39-dnaio-0.9.1 indirect-failed 0
biology/rna-seq rna-seq-1.2.2nb1 indirect-failed 0
biology/py-macs3 py312-macs3-3.0.0 indirect-failed 0
biology/gp gp-0.26 ok 0
biology/atac-seq atac-seq-1.4 indirect-failed 0
biology/molsketch molsketch-0.8.0nb6 indirect-failed 0
biology/py-dna-features-viewer py311-dna-features-viewer-3.1.3 indirect-failed 0
biology/arka arka-0.11nb2 indirect-failed 0
biology/py-macs3 py310-macs3-3.0.0 indirect-failed 0
biology/py-cutadapt py311-cutadapt-3.5 indirect-failed 0
biology/puzzle puzzle-5.2 indirect-failed 0
biology/py-macs3 py39-macs3-3.0.0 indirect-failed 0
biology/gabedit gabedit-2.4.8nb17 indirect-failed 0
biology/R-popbio R-popbio-2.7 indirect-failed 0
biology/generand generand-0.1.2 failed 0
biology/py-bcbio-gff py27-bcbio-gff-0.7.0 indirect-failed 0
biology/py-macs2 py39-macs2-2.2.9.1 indirect-failed 0
biology/ncbi-blast+ ncbi-blast+-2.14.1nb2 indirect-failed 0
biology/plink plink-1.07nb1 indirect-failed 0
biology/coordgenlibs coordgenlibs-1.4.2nb7 indirect-failed 0
biology/py-macs2 py312-macs2-2.2.9.1 indirect-failed 0
biology/coalesce coalesce-1.5.0.2nb1 ok 0
biology/mpqc mpqc-2.3.1nb12 indirect-failed 0
biology/htslib htslib-1.17nb3 indirect-failed 0
biology/py-pydicom py38-pydicom-2.4.4 indirect-failed 0
biology/peak-classifier peak-classifier-0.1.4.13 indirect-failed 0
biology/samtools samtools-1.17nb1 indirect-failed 0
biology/py-biopython py311-biopython-1.81 indirect-failed 0