=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Building for racon-1.4.3 [ 3%] Building CXX object vendor/spoa/CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o [ 6%] Building CXX object vendor/spoa/CMakeFiles/spoa.dir/src/alignment_engine.cpp.o [ 9%] Building CXX object vendor/spoa/CMakeFiles/spoa.dir/src/graph.cpp.o [ 12%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/adler32.o [ 15%] Building CXX object vendor/thread_pool/CMakeFiles/thread_pool.dir/src/thread_pool.cpp.o [ 18%] Building CXX object vendor/edlib/CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o [ 21%] Building CXX object vendor/logger/CMakeFiles/logger.dir/src/logger.cpp.o [ 24%] Building CXX object vendor/spoa/CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o [ 27%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/compress.o [ 30%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/crc32.o [ 33%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/deflate.o [ 36%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/gzclose.o /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/graph.cpp: In member function 'void spoa::Graph::print_graphviz() const': /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/graph.cpp:700:47: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'int64_t' {aka 'long long int'} [-Wformat=] 700 | printf(" %u -> %u [label = \"%lu\"", i, edge->end_node_id_, | ~~^ | | | long unsigned int | %llu 701 | edge->total_weight_); | ~~~~~~~~~~~~~~~~~~~ | | | int64_t {aka long long int} [ 39%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/gzlib.o [ 42%] Linking CXX static library lib/liblogger.a [ 42%] Built target logger [ 45%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/gzread.o [ 48%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/gzwrite.o [ 51%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/inflate.o [ 54%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/infback.o [ 57%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/inftrees.o [ 60%] Linking CXX static library lib/libthread_pool.a [ 60%] Built target thread_pool [ 63%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/inffast.o [ 66%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/trees.o [ 69%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/uncompr.o /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:313:30: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 313 | std::unique_ptr<__mxxxi[]> sequence_profile_storage; | ^ /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:318:30: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 318 | std::unique_ptr<__mxxxi[]> M_storage; | ^ /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:322:30: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 322 | std::unique_ptr<__mxxxi[]> masks_storage; | ^ /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:326:30: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 326 | std::unique_ptr<__mxxxi[]> penalties_storage; | ^ /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp: In member function 'void spoa::SimdAlignmentEngine::realloc(uint32_t, uint32_t, uint32_t)': /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:386:69: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 386 | pimpl_->sequence_profile_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:397:54: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 397 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:405:58: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 405 | pimpl_->masks_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:413:62: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 413 | pimpl_->penalties_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ [ 72%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/zutil.o [ 75%] Linking CXX static library ../../lib/libedlib_static.a /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp: In instantiation of 'T* spoa::allocateAlignedMemory(T**, uint32_t, uint32_t) [with T = __vector(4) long long int; uint32_t = unsigned int]': /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:384:61: required from here /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:36:16: warning: 'new' of type '__vector(4) long long int' with extended alignment 32 [-Waligned-new=] 36 | *storage = new T[size + alignment - 1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:36:16: note: uses 'void* operator new [](std::size_t)', which does not have an alignment parameter /pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:36:16: note: use '-faligned-new' to enable C++17 over-aligned new support [ 75%] Built target edlib_static [ 78%] Linking C static library ../../lib/libz.a [ 78%] Built target zlibstatic sh: /usr/pkg/bin/cmake: not found --- vendor/spoa/lib/libspoa.a --- *** [vendor/spoa/lib/libspoa.a] Error code 127 make[2]: stopped in /pbulk/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build 1 error make[2]: stopped in /pbulk/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build --- vendor/spoa/CMakeFiles/spoa.dir/all --- *** [vendor/spoa/CMakeFiles/spoa.dir/all] Error code 2 make[1]: stopped in /pbulk/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build 1 error make[1]: stopped in /pbulk/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build *** [all] Error code 2 make: stopped in /pbulk/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build 1 error make: stopped in /pbulk/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build *** Error code 2 Stop. make[1]: stopped in /usr/pkgsrc/biology/racon *** Error code 1 Stop. make: stopped in /usr/pkgsrc/biology/racon