=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Building for py312-scipy-1.17.0 * Building wheel... + meson setup /pbulk/work/math/py-scipy/work/scipy-1.17.0 /pbulk/work/math/py-scipy/work/scipy-1.17.0/.mesonpy-co7lvvtm -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md -Dblas=blas -Dlapack=lapack --native-file=/pbulk/work/math/py-scipy/work/scipy-1.17.0/.mesonpy-co7lvvtm/meson-python-native-file.ini The Meson build system Version: 1.10.0 Source dir: /pbulk/work/math/py-scipy/work/scipy-1.17.0 Build dir: /pbulk/work/math/py-scipy/work/scipy-1.17.0/.mesonpy-co7lvvtm Build type: native build Project name: scipy Project version: 1.17.0 C compiler for the host machine: gcc (gcc 12.5.0 "gcc (nb1 20250721) 12.5.0") C linker for the host machine: gcc ld.bfd 2.42 C++ compiler for the host machine: c++ (gcc 12.5.0 "g++ (nb1 20250721) 12.5.0") C++ linker for the host machine: c++ ld.bfd 2.42 Cython compiler for the host machine: cython-3.12 (cython 3.2.4) Host machine cpu family: x86_64 Host machine cpu: x86_64 Program python found: YES (/usr/pkg/bin/python3.12) Found pkg-config: YES (/pbulk/work/math/py-scipy/work/.tools/bin/pkg-config) 2.5.1 Run-time dependency python found: YES 3.12 Program cython-3.12 found: YES (/usr/pkg/bin/cython-3.12) Compiler for C supports arguments -Wno-unused-but-set-variable: YES Compiler for C supports arguments -Wno-unused-function: YES Compiler for C supports arguments -Wno-conversion: YES Compiler for C supports arguments -Wno-misleading-indentation: YES Library m found: YES Fortran compiler for the host machine: gfortran (gcc 12.5.0 "GNU Fortran (GCC) 12.5.0") Fortran linker for the host machine: gfortran ld.bfd 2.42 ../meson.build:94: WARNING: Consider using the built-in option for language standard version instead of using "-std=legacy". Compiler for Fortran supports arguments -Wno-conversion: YES Checking if "-Wl,--version-script" links: YES Program tools/generate_f2pymod.py found: YES (/usr/pkg/bin/python3.13 /pbulk/work/math/py-scipy/work/scipy-1.17.0/tools/generate_f2pymod.py) Program scipy/_build_utils/tempita.py found: YES (/usr/pkg/bin/python3.13 /pbulk/work/math/py-scipy/work/scipy-1.17.0/scipy/_build_utils/tempita.py) Program pythran-3.12 found: YES 0.18.1 0.18.1 (/usr/pkg/bin/pythran-3.12) Found pkg-config: YES (/pbulk/work/math/py-scipy/work/.tools/bin/pkg-config) 2.5.1 Did not find CMake 'cmake' Found CMake: NO Run-time dependency xsimd found: NO (tried pkgconfig and cmake) Executing subproject xsf xsf| Project name: xsf xsf| Project version: 0.1.3 xsf| C++ compiler for the host machine: c++ (gcc 12.5.0 "g++ (nb1 20250721) 12.5.0") xsf| C++ linker for the host machine: c++ ld.bfd 2.42 xsf| Build targets in project: 0 xsf| Subproject xsf finished. Executing subproject boost_math boost_math| Project name: boost-math boost_math| Project version: 1.89.0 boost_math| Build targets in project: 0 boost_math| Subproject boost_math finished. Executing subproject qhull_r qhull_r| Project name: qhull_r qhull_r| Project version: 8.0.2 qhull_r| C compiler for the host machine: gcc (gcc 12.5.0 "gcc (nb1 20250721) 12.5.0") qhull_r| C linker for the host machine: gcc ld.bfd 2.42 qhull_r| Compiler for C supports arguments -Wno-unused-but-set-variable: YES (cached) qhull_r| Build targets in project: 1 qhull_r| Subproject qhull_r finished. Run-time dependency threads found: YES numpy-config found: NO Run-time dependency numpy found: NO (tried pkgconfig and config-tool) Message: f2py free-threading disabled; need numpy >=2.1.0. Message: See https://github.com/mesonbuild/meson/issues/14651 Library npymath found: YES pybind11-config found: YES (/pbulk/work/math/py-scipy/work/.buildlink/bin/pybind11-config) 3.0.1 Run-time dependency pybind11 found: YES 3.0.1 Checking if "thread_local" compiles: NO Checking if "_Thread_local" compiles: YES Checking if "__thread" compiles: YES Configuring scipy_config.h using configuration Program f2py-3.12 found: YES (/usr/pkg/bin/f2py-3.12) Run-time dependency blas found: YES 3.12.0 Run-time dependency cblas found: YES 3.12.0 Run-time dependency lapack found: YES 3.12.0 Run-time dependency python found: YES 3.12 Compiler for C supports arguments -Wno-maybe-uninitialized: YES Compiler for C supports arguments -Wno-discarded-qualifiers: YES Compiler for C supports arguments -Wno-empty-body: YES Compiler for C supports arguments -Wno-implicit-function-declaration: YES Compiler for C supports arguments -Wno-parentheses: YES Compiler for C supports arguments -Wno-switch: YES Compiler for C supports arguments -Wno-unused-label: YES Compiler for C supports arguments -Wno-unused-result: YES Compiler for C supports arguments -Wno-unused-variable: YES Compiler for C supports arguments -Wno-unused-but-set-variable: YES (cached) Compiler for C++ supports arguments -Wno-bitwise-instead-of-logical: NO Compiler for C++ supports arguments -Wno-cpp: YES Compiler for C++ supports arguments -Wno-class-memaccess: YES Compiler for C++ supports arguments -Wno-deprecated-declarations: YES Compiler for C++ supports arguments -Wno-deprecated-builtins: NO Compiler for C++ supports arguments -Wno-format-truncation: YES Compiler for C++ supports arguments -Wno-maybe-uninitialized: YES Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-sign-compare: YES Compiler for C++ supports arguments -Wno-switch: YES Compiler for C++ supports arguments -Wno-terminate: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Compiler for C++ supports arguments -Wno-unused-function: YES Compiler for C++ supports arguments -Wno-unused-local-typedefs: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-int-in-bool-context: YES Compiler for Fortran supports arguments -Wno-argument-mismatch: YES Compiler for Fortran supports arguments -Wno-conversion: YES (cached) Compiler for Fortran supports arguments -Wno-intrinsic-shadow: YES Compiler for Fortran supports arguments -Wno-maybe-uninitialized: YES Compiler for Fortran supports arguments -Wno-surprising: YES Compiler for Fortran supports arguments -Wno-uninitialized: YES Compiler for Fortran supports arguments -Wno-unused-dummy-argument: YES Compiler for Fortran supports arguments -Wno-unused-label: YES Compiler for Fortran supports arguments -Wno-unused-variable: YES Compiler for Fortran supports arguments -Wno-tabs: YES Compiler for Fortran supports arguments -Wno-argument-mismatch: YES (cached) Compiler for Fortran supports arguments -Wno-conversion: YES (cached) Compiler for Fortran supports arguments -Wno-maybe-uninitialized: YES (cached) Compiler for Fortran supports arguments -Wno-unused-dummy-argument: YES (cached) Compiler for Fortran supports arguments -Wno-unused-label: YES (cached) Compiler for Fortran supports arguments -Wno-unused-variable: YES (cached) Compiler for Fortran supports arguments -Wno-tabs: YES (cached) Compiler for Fortran supports arguments -cpp -ffree-line-length-none -ffixed-line-length-none: YES Checking if "Check atomic builtins without -latomic" links: YES Configuring __config__.py using configuration DEPRECATION: Variable substitution with boolean value 'CROSS_COMPILED' is deprecated. DEPRECATION: Variable substitution with boolean value 'BLAS_FOUND' is deprecated. DEPRECATION: Variable substitution with boolean value 'BLAS_HAS_ILP64' is deprecated. DEPRECATION: Variable substitution with boolean value 'LAPACK_FOUND' is deprecated. DEPRECATION: Variable substitution with boolean value 'LAPACK_HAS_ILP64' is deprecated. Checking for function "open_memstream" : YES Configuring messagestream_config.h using configuration Program _generate_pyx.py found: YES (/usr/pkg/bin/python3.13 /pbulk/work/math/py-scipy/work/scipy-1.17.0/scipy/special/_generate_pyx.py) Program _generate_pyx.py found: YES (/usr/pkg/bin/python3.13 /pbulk/work/math/py-scipy/work/scipy-1.17.0/scipy/linalg/_generate_pyx.py) Program ../_generate_sparsetools.py found: YES (/usr/pkg/bin/python3.13 /pbulk/work/math/py-scipy/work/scipy-1.17.0/scipy/sparse/sparsetools/../_generate_sparsetools.py) Checking for size of "void*" : 8 Executing subproject highs highs| Project name: highs highs| Project version: 1.8.0 highs| C compiler for the host machine: gcc (gcc 12.5.0 "gcc (nb1 20250721) 12.5.0") highs| C linker for the host machine: gcc ld.bfd 2.42 highs| C++ compiler for the host machine: c++ (gcc 12.5.0 "g++ (nb1 20250721) 12.5.0") highs| C++ linker for the host machine: c++ ld.bfd 2.42 highs| Compiler for C++ supports arguments -Wno-invalid-offsetof: YES highs| Compiler for C++ supports arguments -Wno-maybe-uninitialized: YES (cached) highs| Compiler for C++ supports arguments -Wno-reorder: YES highs| Compiler for C++ supports arguments -Wno-reorder-ctor: NO highs| Compiler for C++ supports arguments -Wno-sometimes-uninitialized: NO highs| Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES (cached) highs| Compiler for C++ supports arguments -Wno-unused-variable: YES (cached) highs| Compiler for C++ supports arguments -Wno-use-after-free: YES highs| Compiler for C++ supports arguments -Wno-comment: YES highs| Compiler for C supports arguments -Wno-comment: YES highs| Compiler for C supports arguments -Wno-invalid-offsetof: NO highs| Compiler for C supports arguments -Wno-maybe-uninitialized: YES (cached) highs| Compiler for C supports arguments -Wno-sometimes-uninitialized: NO highs| Compiler for C supports arguments -Wno-unused-label: YES (cached) highs| Compiler for C supports arguments -Wno-use-after-free: YES highs| Compiler for C supports arguments -Wno-unused-but-set-variable: YES (cached) highs| Compiler for C supports arguments -Wno-unused-variable: YES (cached) highs| Compiler for C supports arguments -Wno-use-after-free: YES (cached) highs| Compiler for C++ supports arguments -mpopcnt: YES highs| Dependency threads found: YES unknown (cached) highs| Checking if "Check atomic builtins without -latomic" links: YES (cached) highs| Dependency zlib skipped: feature use_zlib disabled highs| Checking if "mm_pause check" compiles: YES highs| Checking if "builtin_clz check" compiles: YES highs| Configuring HConfig.h.meson.interim using configuration highs| Build targets in project: 136 highs| Subproject highs finished. Build targets in project: 180 scipy 1.17.0 Subprojects boost_math : YES highs : YES qhull_r : YES xsf : YES User defined options Native files: /pbulk/work/math/py-scipy/work/scipy-1.17.0/.mesonpy-co7lvvtm/meson-python-native-file.ini b_ndebug : if-release b_vscrt : md blas : blas buildtype : release lapack : lapack Found ninja-1.13.2 at /usr/pkg/bin/ninja + /usr/pkg/bin/ninja -j8 [1/1254] Generating scipy/linalg/fblas_module with a custom command FAILED: [code=1] scipy/linalg/_fblasmodule.c scipy/linalg/_fblas-f2pywrappers.f /usr/pkg/bin/python3.13 /pbulk/work/math/py-scipy/work/scipy-1.17.0/tools/generate_f2pymod.py ../scipy/linalg/fblas.pyf.src -o scipy/linalg Traceback (most recent call last): File "/pbulk/work/math/py-scipy/work/scipy-1.17.0/tools/generate_f2pymod.py", line 311, in main() ~~~~^^ File "/pbulk/work/math/py-scipy/work/scipy-1.17.0/tools/generate_f2pymod.py", line 305, in main raise RuntimeError(f"Processing {fname_pyf} with f2py failed!\n" f"{out.decode()}\n" f"{err.decode()}") RuntimeError: Processing scipy/linalg/fblas.pyf with f2py failed! /usr/pkg/bin/python3.13: Error while finding module specification for 'numpy.f2py' (ModuleNotFoundError: No module named 'numpy') [2/1254] Copying file scipy/optimize/cython_optimize/__init__.py [3/1254] Copying file scipy/__init__.py [4/1254] Copying file scipy/_lib/__init__.py [5/1254] Scanning target fitpack_lib for modules [6/1254] Scanning target odrpack for modules [7/1254] Generating from 'src/dfitpack.pyf' FAILED: [code=1] scipy/interpolate/_dfitpack.so.p/_dfitpackmodule.c scipy/interpolate/_dfitpack.so.p/_dfitpack-f2pywrappers.f /usr/pkg/bin/python3.13 /pbulk/work/math/py-scipy/work/scipy-1.17.0/tools/generate_f2pymod.py ../scipy/interpolate/src/dfitpack.pyf -o scipy/interpolate/_dfitpack.so.p '--f2cmap=""' Traceback (most recent call last): File "/pbulk/work/math/py-scipy/work/scipy-1.17.0/tools/generate_f2pymod.py", line 311, in main() ~~~~^^ File "/pbulk/work/math/py-scipy/work/scipy-1.17.0/tools/generate_f2pymod.py", line 305, in main raise RuntimeError(f"Processing {fname_pyf} with f2py failed!\n" f"{out.decode()}\n" f"{err.decode()}") RuntimeError: Processing ../scipy/interpolate/src/dfitpack.pyf with f2py failed! /usr/pkg/bin/python3.13: Error while finding module specification for 'numpy.f2py' (ModuleNotFoundError: No module named 'numpy') [8/1254] Generating scipy/_cyutility.c with a custom command ninja: build stopped: subcommand failed. ERROR Backend subprocess exited when trying to invoke build_wheel *** Error code 1 Stop. make[1]: stopped making "all" in /usr/pkgsrc/math/py-scipy *** Error code 1 Stop. make: stopped making "all" in /usr/pkgsrc/math/py-scipy