=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Installing for R-igraph-2.1.4nb2
=> Generating pre-install file lists
=> Creating installation directories
* installing *source* package 'igraph' ...
** this is package 'igraph' version '2.1.4'
file 'src/vendor/cigraph/vendor/plfit/hzeta.c' has the wrong MD5 checksum
** using staged installation
libxml2 include directories: -I/usr/pkg/include/libxml2
libxml2 library link flags: -Wl,-R/usr/pkg/lib -L/usr/pkg/lib -lxml2 -lpthread -L/usr/lib -lz -lm
Using vendored GLPK
** libs
using C compiler: 'gcc (nb1 20250721) 12.5.0'
using C++ compiler: 'g++ (nb1 20250721) 12.5.0'
c++ -std=gnu++20 -I"/usr/pkg/lib/R/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers  -I/usr/pkg/include/libxml2 -DHAVE_LIBXML -Ivendor/cigraph/vendor/glpk -Ivendor/cigraph/vendor/glpk/env -Ivendor/cigraph/vendor/glpk/minisat -Ivendor/cigraph/vendor/glpk/misc -Ivendor/cigraph/vendor/glpk/draft -Ivendor/cigraph/vendor/glpk/npp -Ivendor/cigraph/vendor/glpk/api -Ivendor/cigraph/vendor/glpk/mpl -Ivendor/cigraph/vendor/glpk/bflib -Ivendor/cigraph/vendor/glpk/amd -Ivendor/cigraph/vendor/glpk/simplex -Ivendor/cigraph/vendor/glpk/colamd  -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL=  -DPRPACK_IGRAPH_SUPPORT  -DHAVE_GFORTRAN=1  -D_GNU_SOURCE=1 -I'/usr/pkg/lib/R/library/cpp11/include' -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2   -fvisibility=hidden -fpic  -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2   -c cpp11.cpp -o cpp11.o
In file included from /pbulk/work/math/R-igraph/work/.buildlink/lib/R/library/cpp11/include/cpp11.hpp:7,
                 from /pbulk/work/math/R-igraph/work/.buildlink/lib/R/library/cpp11/include/cpp11/declarations.hpp:13,
                 from cpp11.cpp:5:
/pbulk/work/math/R-igraph/work/.buildlink/lib/R/library/cpp11/include/cpp11/data_frame.hpp: In static member function 'static SEXPREC* cpp11::data_frame::get_attrib0(SEXP, SEXP)':
/pbulk/work/math/R-igraph/work/.buildlink/lib/R/library/cpp11/include/cpp11/data_frame.hpp:30:22: error: 'ATTRIB' was not declared in this scope
   30 |     for (SEXP attr = ATTRIB(x); attr != R_NilValue; attr = CDR(attr)) {
      |                      ^~~~~~
In file included from /pbulk/work/math/R-igraph/work/.buildlink/lib/R/library/cpp11/include/cpp11.hpp:11:
/pbulk/work/math/R-igraph/work/.buildlink/lib/R/library/cpp11/include/cpp11/function.hpp: In static member function 'static SEXPREC* cpp11::package::get_namespace(const char*)':
/pbulk/work/math/R-igraph/work/.buildlink/lib/R/library/cpp11/include/cpp11/function.hpp:71:36: error: 'R_NamespaceRegistry' was not declared in this scope
   71 |     return safe[detail::r_env_get](R_NamespaceRegistry, name_sexp);
      |                                    ^~~~~~~~~~~~~~~~~~~
*** Error code 1

Stop.
make: stopped making "all" in /pbulk/work/math/R-igraph/work/igraph/src
ERROR: compilation failed for package 'igraph'
* removing '/pbulk/work/math/R-igraph/work/.destdir/usr/pkg/lib/R/library/igraph'
*** Error code 1

Stop.
make[1]: stopped making "stage-install" in /usr/pkgsrc/math/R-igraph
*** Error code 1

Stop.
make: stopped making "stage-install" in /usr/pkgsrc/math/R-igraph