=> Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for MACS2-2.2.9.1.tar.gz => Checksum SHA512 OK for MACS2-2.2.9.1.tar.gz ===> Installing dependencies for py314-macs2-2.2.9.1nb2 ========================================================================== The following variables will affect the build process of this package, py314-macs2-2.2.9.1nb2. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp * PYTHON_VERSION_DEFAULT = 313 Based on these variables, the following variables have been set: * BLAS_INCLUDES = -I/usr/pkg/include/netlib * BLAS_LIBS = -lblas * BLAS_PC = blas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * CBLAS_PC = cblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACKE_PC = lapacke * LAPACK_LIBS = -llapack -lblas * LAPACK_PC = lapack * PYPACKAGE = python314 You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/usr/bin/make clean' after the changes. ========================================================================== => Tool dependency py314-cython-[0-9]*: found py314-cython-3.2.4 => Tool dependency py314-setuptools>=78: found py314-setuptools-80.9.0 => Tool dependency py314-build>=0: found py314-build-1.4.0 => Tool dependency py314-installer>=0.7.0nb1: found py314-installer-0.7.0nb3 => Tool dependency mktools-[0-9]*: found mktools-20250213 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Full dependency py314-numpy>=1.20.3nb1: found py314-numpy-2.4.1 => Full dependency python314>=3.14.0: found python314-3.14.2nb1 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Overriding tools for py314-macs2-2.2.9.1nb2 ===> Extracting for py314-macs2-2.2.9.1nb2 ===> Patching for py314-macs2-2.2.9.1nb2 => Applying pkgsrc patches for py314-macs2-2.2.9.1nb2 ===> Creating toolchain wrappers for py314-macs2-2.2.9.1nb2 ===> Configuring for py314-macs2-2.2.9.1nb2 mv -f /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/cPosValCalculation.c /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1 /bin/rm -f /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/*.c /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/*/*.c cd /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1 && /usr/pkg/bin/cythonize-3.14 /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/*.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/PeakDetect.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/PeakDetect.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/PeakModel.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/PeakModel.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Pileup.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Pileup.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Prob.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Prob.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Signal.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Signal.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Statistics.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/Statistics.pyx cd /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1 && /usr/pkg/bin/cythonize-3.14 /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/*/*.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/BedGraph.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/BedGraph.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/BedGraphIO.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/BedGraphIO.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/CallPeakUnit.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/CallPeakUnit.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/FixWidthTrack.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/FixWidthTrack.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/PairedEndTrack.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/PairedEndTrack.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/Parser.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/Parser.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/PeakIO.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/PeakIO.pyx Compiling /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/ScoreTrack.pyx because it changed. [1/1] Cythonizing /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2/IO/ScoreTrack.pyx mv -f /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/cPosValCalculation.c /pbulk/work/biology/py-macs2/work/MACS-2.2.9.1/MACS2